PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_4A418E6B5.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 1002aa    MW: 114438 Da    PI: 6.2829
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_4A418E6B5.4genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.22.6e-18106211290
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkke 71 
                             Y++YA ++GF+ ++++ ++   +g  +++tf C++ gk++e                       ek+ r+++ ++tgCka+l ++ +
  Traes_4AS_4A418E6B5.4 106 LYKAYAFRMGFHAVRRTCHNY--EGIRYRSTFSCTQAGKSREGAAPsedsgaryplrnkrgaatPEKRARRTTAEKTGCKAMLIIRDK 191
                            7***********999998887..7889************99988778999************9877777888899************9 PP

                   FAR1  72 k.dgkwevtkleleHnHela 90 
                            + +++w+v+ ++leHnH+++
  Traes_4AS_4A418E6B5.4 192 RvNDRWKVEFVDLEHNHPCT 211
                            99***************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-16106211IPR004330FAR1 DNA binding domain
PfamPF105511.5E-22338432IPR018289MULE transposase domain
PROSITE profilePS509669.495620656IPR007527Zinc finger, SWIM-type
SMARTSM005750.0029631658IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1002 aa     Download sequence    Send to blast
MEEGSERPPH SRATRAQNPS CEEEEAAGLV KDEIADDLNA DPAEDEDEDE VVVEEGEDEV  60
LVASDDDDGA ADGAGGDDDF VPRTLEEALV PRVGTVFDSV DEAFSLYKAY AFRMGFHAVR  120
RTCHNYEGIR YRSTFSCTQA GKSREGAAPS EDSGARYPLR NKRGAATPEK RARRTTAEKT  180
GCKAMLIIRD KRVNDRWKVE FVDLEHNHPC TPDMVRFLKS YREMPESAKK KAKITVEMDE  240
TVEKSLSEIA ETRKFPTRPK RSVSGGAAAG GLRFNRTDSF VQRFGDEDLI AVKKFIEMMQ  300
EKKPNFIHSW DLDQESRMKN FFWTDLRSQA QYRYFGDVIS LDVMYLQHSR ASLPLATLLG  360
VNNHGHLVLL GCGLLSKDSK ENYVWLLKRW LSCMNGKPPE AITTSYSDVV AEAVSEVLPD  420
ARHRFCFWHI LKKLQENVGR THEKEAISLR FKEVVYDTVT LTDFEKEWEA MVEHYKLKDN  480
EWFSALYSCR KQWAPGYVNH SFWAGTSAIR KVEKPDPYFD GVVTSKTTLP VFLEQYETTL  540
RGKLEREAYD DLRSYYSRLT LLSGLPFEEQ LLELYTVPMF QAFQDEIKQL MHVICKEVDR  600
SGNSITYMVS ELIQGKKVDY TVVYNNSDKD VWCICRSFPS RGILCSHALS VLKQENVLML  660
PSKYILSRWR KDFRIIHASA SPNSVALQRD LSIFDDLYVR GHEYLEDVID IGAREPELKE  720
FVLSAMKEAK GKLVRPGQTQ QGDQRVDVNM AVTGQVSADR RVDVNMASNT TSIIHRDRRV  780
EANMPLNTRA LVHEDNMASN TTSLIHGDRR ADMEMQTPHL IHREGRVDMN MTAPHLMQRE  840
RRVDVNMTSP HLIHGDRRVD MNLGSPHFIH SDRGVDMNLT SPHLIHGDRR VDMNMASPHL  900
IHGDRRVDMN MTSPHMIHGD TRVDMNMVST SQDDAMHTFD LVNVNLESSL PMAATDFMQM  960
HPHPPVYHPK QLLNMRDQVM DSNKRSNVET NTYFIGGGMH VG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2512050.0AK251205.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf106g10, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752206.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A096UQL70.0A0A096UQL7_WHEAT; Uncharacterized protein
STRINGMLOC_56419.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-83far-red elongated hypocotyls 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]